Package: treefit 1.0.3.9000

Kouhei Sutou

treefit: The First Software for Quantitative Trajectory Inference

Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.

Authors:Momoko Hayamizu [aut], Kouhei Sutou [aut, cre], Ryohei Suzuki [aut], Hiromi Ishii [aut]

treefit_1.0.3.9000.tar.gz
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treefit.pdf |treefit.html
treefit/json (API)
NEWS

# Install 'treefit' in R:
install.packages('treefit', repos = c('https://hayamizu-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hayamizu-lab/treefit-r/issues

On CRAN:

Conda:

4.95 score 3 stars 1 scripts 328 downloads 6 exports 32 dependencies

Last updated 2 months agofrom:91474e79b3. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 12 2025
R-4.5-winWARNINGMar 12 2025
R-4.5-macWARNINGMar 12 2025
R-4.5-linuxWARNINGMar 12 2025
R-4.4-winWARNINGMar 12 2025
R-4.4-macWARNINGMar 12 2025
R-4.4-linuxWARNINGMar 12 2025
R-4.3-winWARNINGMar 12 2025
R-4.3-macWARNINGMar 12 2025

Exports:generate_2d_n_arms_linked_star_datagenerate_2d_n_arms_star_datagenerate_n_arms_star_dataperturbate_knnperturbate_poissontreefit

Dependencies:clicolorspacecpp11fansifarverggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpracmaR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

Treefit - Getting started

Rendered fromtreefit.Rmdusingknitr::rmarkdownon Mar 12 2025.

Last update: 2020-03-04
Started: 2020-02-20

Treefit - Working with Seurat

Rendered fromworking-with-seurat.Rmdusingknitr::rmarkdownon Mar 12 2025.

Last update: 2021-03-20
Started: 2020-02-25