Package: treefit 1.0.2.9000

Kouhei Sutou

treefit: The First Software for Quantitative Trajectory Inference

Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.

Authors:Momoko Hayamizu [aut], Kouhei Sutou [aut, cre], Ryohei Suzuki [aut], Hiromi Ishii [aut]

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treefit.pdf |treefit.html✨
treefit/json (API)
NEWS

# Install 'treefit' in R:
install.packages('treefit', repos = c('https://hayamizu-lab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hayamizu-lab/treefit-r/issues

On CRAN:

4.48 score 3 stars 1 scripts 158 downloads 6 exports 32 dependencies

Last updated 1 years agofrom:1414b561a8. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-winWARNINGSep 27 2024
R-4.5-linuxWARNINGOct 27 2024
R-4.4-winWARNINGOct 27 2024
R-4.4-macWARNINGOct 27 2024
R-4.3-winWARNINGOct 27 2024
R-4.3-macWARNINGOct 27 2024

Exports:generate_2d_n_arms_linked_star_datagenerate_2d_n_arms_star_datagenerate_n_arms_star_dataperturbate_knnperturbate_poissontreefit

Dependencies:clicolorspacecpp11fansifarverggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpracmaR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

Treefit - Getting started

Rendered fromtreefit.Rmdusingknitr::rmarkdownon Oct 27 2024.

Last update: 2020-03-04
Started: 2020-02-20

Treefit - Working with Seurat

Rendered fromworking-with-seurat.Rmdusingknitr::rmarkdownon Oct 27 2024.

Last update: 2021-03-20
Started: 2020-02-25