Package: treefit
Title: The First Software for Quantitative Trajectory Inference
Version: 1.0.3.9000
Authors@R: c(
      person(given="Momoko",
             family="Hayamizu",
             email="hayamizu@ism.ac.jp",
             role=c("aut"),
             comment=c(ORCID="0000-0001-8825-6331")),
      person(given="Kouhei",
             family="Sutou",
             email="kou@clear-code.com",
             role=c("aut", "cre"),
             comment=c(ORCID="0000-0002-5528-5109")),
      person(given="Ryohei",
             family="Suzuki",
             email="ryoheis@acm.org",
             role=c("aut"),
             comment=c(ORCID="0000-0002-1528-665X")),
      person(given="Hiromi",
             family="Ishii",
             email="h-ishii@math.tsukuba.ac.jp",
             role=c("aut"),
             comment=c(ORCID="0000-0002-7752-1782"))
    )
Description: Perform two types of analysis: 1) checking the
        goodness-of-fit of tree models to your single-cell gene
        expression data; and 2) deciding which tree best fits your
        data.
License: GPL (>= 3)
URL: https://hayamizu-lab.github.io/treefit-r/,
        https://github.com/hayamizu-lab/treefit-r/
BugReports: https://github.com/hayamizu-lab/treefit-r/issues
Encoding: UTF-8
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.2
Imports: ggplot2, igraph, patchwork, pracma
Suggests: Seurat, gridExtra, knitr, plotly, qpdf, rmarkdown, testthat
VignetteBuilder: knitr
Language: en-US
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://hayamizu-lab.r-universe.dev
Date/Publication: 2026-06-22 20:54:14 UTC
RemoteUrl: https://github.com/hayamizu-lab/treefit-r
RemoteRef: HEAD
RemoteSha: 462101ae5e4f20938cacf59e1520341fa72bb6a2
NeedsCompilation: no
Packaged: 2026-10-20 08:21:09 UTC; root
Author: Momoko Hayamizu [aut] (ORCID: <https://orcid.org/0000-0001-8825-6331>),
  Kouhei Sutou [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5528-5109>),
  Ryohei Suzuki [aut] (ORCID: <https://orcid.org/0000-0002-1528-665X>),
  Hiromi Ishii [aut] (ORCID: <https://orcid.org/0000-0002-7752-1782>)
Maintainer: Kouhei Sutou <kou@clear-code.com>